PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G120000.1
Common NamePHAVU_010G120000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 383aa    MW: 43260.2 Da    PI: 5.9883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G120000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13181232155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Phvul.010G120000.1 181 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 232
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.54E-13179236No hitNo description
PROSITE profilePS5088815.751180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13181246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10186237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MERLQGPLNS CFFGDPLGVN CFDQVLVDEE SLRLEEEEQL LISSLEDNMP FLQMLQSVES  60
PQFFPLKEPS FQTLLRLQHI KKPWEGMTYV PRMEAQVQTA LELESCVTHD MLEMQSPVKS  120
ESNELQHPLS ILCVEKVSYE CNQEPHKVSQ SCPKSQPAAT RERRKRKRTR PSKNKEDVEN  180
QRMTHIAVER NRRRQMNDHL SVLRSLMPPS YIQRGDQASI IGGAIDFVKE LEQLLQSLEA  240
QKRMRKNEEG GGSSSTMLSN APPPSSSSSP HGYGMRSSTS EEVNCGDEMK AENKSEAADI  300
KVTLIQTHVN LKIECQRRPG QLIKVIVALE DLRLTILHLN ITSSETSVLY SLNLKIEEGC  360
NLRSASDIAE AVHHMFNFIN GS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RRKRKR
2181192RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G120000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135328.10.0hypothetical protein PHAVU_010G120000g
TrEMBLV7ANT20.0V7ANT2_PHAVU; Uncharacterized protein
STRINGXP_007135328.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.14e-68bHLH family protein