PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G120600.1
Common NamePHAVU_010G120600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 278aa    MW: 31978.8 Da    PI: 4.8807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G120600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.75.3e-4141343128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +Gf F+Pt+eelv++yLk+++ g++ ++ +vi+++d+++vePw+ p+     +v+ +  ew+fFs+ d ky+++kr nr+tk g+Wk tgk
  Phvul.010G120600.1   4 VGFGFRPTEEELVDYYLKHRLLGDDPHV-HVIPDIDLCEVEPWNVPMllaqsAVQFDLPEWFFFSPVDFKYSNSKRVNRTTKCGFWKPTGK 93 
                         7************************999.99***************6455443333555******************************** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         d+e+ s  +++l+ +kktLv+ykgr ++g+k++W++hey++
  Phvul.010G120600.1  94 DREIRSLdTDTLIATKKTLVYYKGRVSRGVKSNWIIHEYHA 134
                         ****99856778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4612152IPR003441NAC domain
PfamPF023653.1E-224133IPR003441NAC domain
SuperFamilySSF1019411.01E-434152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEIVGFGFRP TEEELVDYYL KHRLLGDDPH VHVIPDIDLC EVEPWNVPML LAQSAVQFDL  60
PEWFFFSPVD FKYSNSKRVN RTTKCGFWKP TGKDREIRSL DTDTLIATKK TLVYYKGRVS  120
RGVKSNWIIH EYHAVTFHES QRTSVLCRLM KKPGPTTEGE GDTQTSDEGE SSRVMVSGYE  180
NEAIERGIPS RGTSAGIETT FQPMHQTYNY FPPLQQSPIG IDQEESSLPH SPFYSSHFRN  240
ESNNMQIPFE TTQEEEQFLS SIWVDERELG YQMPSIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-29515220165NO APICAL MERISTEM PROTEIN
1ut4_B2e-29515220165NO APICAL MERISTEM PROTEIN
1ut7_A2e-29515220165NO APICAL MERISTEM PROTEIN
1ut7_B2e-29515220165NO APICAL MERISTEM PROTEIN
3swm_A2e-29515223168NAC domain-containing protein 19
3swm_B2e-29515223168NAC domain-containing protein 19
3swm_C2e-29515223168NAC domain-containing protein 19
3swm_D2e-29515223168NAC domain-containing protein 19
3swp_A2e-29515223168NAC domain-containing protein 19
3swp_B2e-29515223168NAC domain-containing protein 19
3swp_C2e-29515223168NAC domain-containing protein 19
3swp_D2e-29515223168NAC domain-containing protein 19
4dul_A2e-29515220165NAC domain-containing protein 19
4dul_B2e-29515220165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G120600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150423e-80AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135334.10.0hypothetical protein PHAVU_010G120600g
SwissprotF4JN353e-45NTL9_ARATH; Protein NTM1-like 9
TrEMBLV7ARU10.0V7ARU1_PHAVU; Uncharacterized protein
STRINGXP_007135334.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-47NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]