PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G129400.1
Common NamePHAVU_010G129400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 543aa    MW: 59931.1 Da    PI: 6.1252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G129400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.51.3e-761565302374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPil 91 
                         ++lL  cA a++ g+l+++q+lL  l+elasp+gd+++Rlaa+ ++AL ++l++s  ++++  ++ +++e       + l l f+evsP++
  Phvul.010G129400.1 156 EQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSSGSHTFASTE--PRFFQKTL-LkFYEVSPWF 243
                         689***************************************************8888877766666663..33333333.25******** PP

                GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAee 171
                          f + +aN  Il+ + ++    +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++         +  +  +rL  fA+ 
  Phvul.010G129400.1 244 SFPNNIANASILQVLGEDndnsRTLHILDIGASHGMQWPTFLEALSRRPgGPPPLVRLTVVTASSTEidtpfsIGPAGDNFPSRLLGFAQL 334
                         *************997766666899************************55566*********888899888878899999********** PP

                GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..n.sesFlerfle 259
                         ++v+++++ l    l++l+ ++ +++p+E  +V+ +++lh+l +++ + +   +e+Lk++++++Pk v+++++++++  n  ++F+++f++
  Phvul.010G129400.1 335 MNVNLQIKRLDNCPLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNTSDEK---SEFLKVLRNMEPKGVILSDNNMECccNcCGDFATGFSR 422
                         *********8777*****************************95555555...5********************9885431469******* PP

                GRAS 260 aleyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                          +ey + ++ds+ +a  +r+++er+++E e     + +++ ++ ++    +e +ekW er++eaGF    l+e+a +  ++llrk++ +++
  Phvul.010G129400.1 423 RVEYLWRFLDSTsSAFKGRDNDERKVMEGE-----AAKALINQREM----NEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDsNWE 504
                         ************444545555666666655.....55555444444....6999*********************************9999 PP

                GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                         +++e ++ s+ l Wk++p+ ++S W+
  Phvul.010G129400.1 505 MKLEGDNRSVGLWWKGQPVSFCSLWK 530
                         *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.274129509IPR005202Transcription factor GRAS
PfamPF035144.4E-74156530IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MIMEPNPTSD HSLDWFEGSV SFFPLPPFLD DPYNSSDIQE YQLWDQDISS QYQTDANISS  60
PNVTNIATSI PPPEPCGSNN LKLSDLPKKR SSTDDSSLRP PQSHKHKKIK SKPMNNEADS  120
GEAEGTTTVR KAGGNKKGAA KGVANNCNNK EGRWAEQLLN PCAAAITGGN LTRVQHLLYV  180
LHELASPTGD ANHRLAAHGL KALTHHLSSS LASTSSGSHT FASTEPRFFQ KTLLKFYEVS  240
PWFSFPNNIA NASILQVLGE DNDNSRTLHI LDIGASHGMQ WPTFLEALSR RPGGPPPLVR  300
LTVVTASSTE IDTPFSIGPA GDNFPSRLLG FAQLMNVNLQ IKRLDNCPLH TLSAQSVDTS  360
PDEIFVVCAQ FRLHQLSHNT SDEKSEFLKV LRNMEPKGVI LSDNNMECCC NCCGDFATGF  420
SRRVEYLWRF LDSTSSAFKG RDNDERKVME GEAAKALINQ REMNEGKEKW CERMKEAGFV  480
GEVLGEDAID GGRALLRKYD SNWEMKLEGD NRSVGLWWKG QPVSFCSLWK LDGNDQSSTF  540
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-4115253084473Protein SHORT-ROOT
5b3h_B2e-4115253030419Protein SHORT-ROOT
5b3h_E2e-4115253030419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G129400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135437.10.0hypothetical protein PHAVU_010G129400g
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLV7AT910.0V7AT91_PHAVU; Uncharacterized protein
STRINGXP_007135437.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-146GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]