PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G130200.1
Common NamePHAVU_010G130200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 581aa    MW: 63706.1 Da    PI: 6.7926
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G130200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.6e-15250309155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Phvul.010G130200.1 250 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 309
                         78*******************655454478446*************************98 PP
2AP248.13e-15352403155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Phvul.010G130200.1 352 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                         78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-17250319IPR016177DNA-binding domain
PfamPF008475.4E-12250309IPR001471AP2/ERF domain
CDDcd000185.02E-22250319No hitNo description
SMARTSM003801.1E-29251323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-16251318IPR001471AP2/ERF domain
PROSITE profilePS5103219.177251317IPR001471AP2/ERF domain
PRINTSPR003671.3E-6252263IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18352413IPR016177DNA-binding domain
CDDcd000185.63E-25352413No hitNo description
PfamPF008475.9E-10352403IPR001471AP2/ERF domain
SMARTSM003803.6E-34353417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18353411IPR001471AP2/ERF domain
PROSITE profilePS5103219.006353411IPR001471AP2/ERF domain
PRINTSPR003671.3E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFG RENQERGGGG GGGGEGGGYH PRPSSHPHMS VMPLRSDGSL  60
CVADSFTHSA AHQEWRYDSA IGGGNSNEKG PKLEDFLGCY SNSPNKVFCQ DSQHDQNQSQ  120
SNVSKINVNV APSFCTNAEI ETGDCLTNPS SLLQSFHAYS DNPHALIPTN GMYKSWLAQT  180
QFSDVKPSTE ANGCNFQSLS LTMSPTVQNG VGAISPVQAI EDNRKRAMAK SHAREPVPRK  240
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DKEEKAARAY  300
DLAALKYWGP TTHINFPLST YEKELEEMKH MTRQEFVANL RRKSSGFSRG ASVYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF DISRYDVKRI  420
CSSSTLIAGD LAKRSPKTES PAAVAADDIN TSSSSVPTQP PPLAITEGEH SDELSNMMWN  480
GNADEQAHNE SASINNITES SQQVSPSNSK VGLNPESPPK CSVGLPNEFG VSGTDYGHGY  540
FTLDGPKYDD GNNENDHMSS SRLGNMGLVN QVPMFALWNE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G130200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135445.10.0hypothetical protein PHAVU_010G130200g
SwissprotQ1PFE11e-136AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLV7APC90.0V7APC9_PHAVU; Uncharacterized protein
STRINGXP_007135445.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-131AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]