PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G133300.1
Common NamePHAVU_010G133300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 349aa    MW: 38068.7 Da    PI: 9.924
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G133300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.25.8e-33183239158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF
  Phvul.010G133300.1 183 EEPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKERKPYLHESRHLHAMKRARGSGGRF 239
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-38181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.634182242IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-28184239IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-24185207IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.0E-24216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKNLIEKGSG STHLAAPYAL GCTSWGTSSE SNVQQSSMSR GLTLKMSVLP QQCHKTKPLN  60
FQYQDRDSSS SQSTGQSYQE VGSAQSGQIS VQCSNSSACS TLNTTGRKSV EGAIRSVVRG  120
QDFTFPPSQL CHNQPLAHAA FHLVEPCFSG LLASPYGPQP NIHPAQLIGM ATARIPLPLD  180
LSEEPIYVNA KQYHAILRRR QYRAKLEAQN KLIKERKPYL HESRHLHAMK RARGSGGRFL  240
NTKKLEESKP TSANHAADVS SCTRLNLRGN MSESRRVVLV EKLNYRDGAS TTTSSDITTA  300
SNSGDVFQQH QSEFRLCGYP SHIGRNMQGY SSDMGGGGGN QHRLSVLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-23183243262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G133300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135485.10.0hypothetical protein PHAVU_010G133300g
RefseqXP_007135486.10.0hypothetical protein PHAVU_010G133300g
TrEMBLV7APH00.0V7APH0_PHAVU; Uncharacterized protein
STRINGXP_007135485.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-56nuclear factor Y, subunit A3