PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G146300.1
Common NamePHAVU_010G146300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 348aa    MW: 37922.1 Da    PI: 6.6916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G146300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.8e-18237271135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Phvul.010G146300.1 237 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 271
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.2E-7920323IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.321231267IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-16231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-14234295No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.42E-14236283No hitNo description
PfamPF003202.0E-15237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEAPEYFVGG YYAAGGADQF SQPEKRHADQ KIGEPFAIDD LLDFSHADAI MSDGFFDNVA  60
GNSTDSSTVT AVDSCNSSIS GSDNRFAAAI VPRGFGDPQF SGELCVPYDD MAELEWLSNF  120
VEDSFSAEEE LKTLQLLSGA APSTAIGAKP QTPESSSSTD TLPPFASDET ARNAPFLHSE  180
TPLPGKARSK RSRAAPGDWS TRLLHLVAPE QEKLPHTKAS PVKKREGTNA ECSGRKCLHC  240
GAEKTPQWRT GPMGPKTLCN ACGVRFKSGR LVPEYRPAAS PTFMSTKHSN SHRKVLELRR  300
QKELQRHQHQ QLMSQSSIFG VSNGGDEFLI HPHHHHHHCG PDFRHVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G146300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135644.10.0hypothetical protein PHAVU_010G146300g
TrEMBLV7ASR60.0V7ASR6_PHAVU; GATA transcription factor
STRINGXP_007135644.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-77GATA transcription factor 9