PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G147600.1
Common NamePHAVU_010G147600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 318aa    MW: 34873.7 Da    PI: 7.1972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G147600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041822201255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Phvul.010G147600.1 182 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 220
                         6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.706170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-10180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.57E-6180224No hitNo description
Gene3DG3DSA:4.10.280.104.3E-7184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMAGNPNWWT AHPPSLIPPQ YALGSSSIPF NSSSQNPESP HSLSQLLFTG LPGEEERVAF  60
SHFQSKKLDE WNEHMLNQSH INPMVDVIKQ EVAQSGNFYH HDQEFQVSGA PWSHMVPVSS  120
SPRSSVASFS SDNLLDSPYN KEDHRKNQLP DHTSECNTTG SGGVYKKTKS QPSSSQPPLK  180
VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEALSSPY LGNGSKNMRN  240
PQSQQVHGER NSVFPEDPGQ LLNDNGLKRK GAPNQDAKEK AKDLRSRGLC LVPVSCTQHV  300
GNENGGDYWA PAYGSGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G147600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135661.10.0hypothetical protein PHAVU_010G147600g
SwissprotQ8S3D16e-65BH068_ARATH; Transcription factor bHLH68
TrEMBLV7AQT60.0V7AQT6_PHAVU; Uncharacterized protein
STRINGXP_007135661.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]