PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G148700.1
Common NamePHAVU_010G148700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 749aa    MW: 83318.5 Da    PI: 5.6237
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G148700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-2196151156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +rk +++t eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Phvul.010G148700.1  96 KRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 151
                         79999***********************************************9877 PP
2START224.43.5e-702644872206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         + ++a++el+k+a  + p+Wv+s+    e++n+de++++f+ +++        +ea+r+s vv+m+l++l++++ld++ qW+e+++    k
  Phvul.010G148700.1 264 IVNRATEELIKMANMGGPLWVRSVetgrEILNYDEYVKEFAVQNScsdkpkTFIEASRDSEVVFMDLPRLLQTFLDVN-QWKEMFPclisK 353
                         567999**********************************99888*****99**************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql++++w+i dvS+d  +++  ++s+v+++++pSg++ie+ksngh+
  Phvul.010G148700.1 354 AATVDVICNGegsngnGAVQLMFAELQMLTPVVPtREVYFVRCCKQLSDEQWAIIDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHC 443
                         ****************************************************************98.9*********************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwveh +++++++h l+r +v sgla+ga++w atlq qce+
  Phvul.010G148700.1 444 KVTWVEHLECQKSTIHTLYRTIVISGLAFGARHWIATLQLQCER 487
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2282147IPR009057Homeodomain-like
SuperFamilySSF466891.71E-2085154IPR009057Homeodomain-like
PROSITE profilePS5007118.07493153IPR001356Homeobox domain
SMARTSM003899.6E-1995157IPR001356Homeobox domain
PfamPF000462.1E-1896151IPR001356Homeobox domain
CDDcd000863.09E-17100151No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084837.027254490IPR002913START domain
SuperFamilySSF559611.65E-30256487No hitNo description
CDDcd088751.05E-106258486No hitNo description
SMARTSM002341.1E-71263487IPR002913START domain
PfamPF018521.7E-56264487IPR002913START domain
Gene3DG3DSA:3.30.530.208.8E-5334469IPR023393START-like domain
SuperFamilySSF559611.17E-11517731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MGVNMSNTPP HTKDLFSSPT LSLSLAGIFR HAEEAAATSG MVVAGDEVRR EDTVEVSSDN  60
SGPMRSRSEE DFDGEGAHED DDDENNDDGD RSKKKKRKYH RHTVEQIREM EALFKESPHP  120
DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELDKLK EENKAMREII  180
NKSCCPNCGM VTATIDASMS TEEKQLLIEN VKLKAEVEKL RATLGKCSPT SPASSGGHEE  240
EENRSSLNFY NGVFGLEKSR IMEIVNRATE ELIKMANMGG PLWVRSVETG REILNYDEYV  300
KEFAVQNSCS DKPKTFIEAS RDSEVVFMDL PRLLQTFLDV NQWKEMFPCL ISKAATVDVI  360
CNGEGSNGNG AVQLMFAELQ MLTPVVPTRE VYFVRCCKQL SDEQWAIIDV SIDKVEDNID  420
ASLVKCRKRP SGCIIEDKSN GHCKVTWVEH LECQKSTIHT LYRTIVISGL AFGARHWIAT  480
LQLQCERLVF NMATNVPTKD STGVATLAGR KSILKLAQRM TWSFCHAVGA SSFHTWTKFT  540
SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SLWLPVSPNV LFDFLRDEAR RSEWDMMSTG  600
GSVQLIANLA KGKDRGNAVN IQKIESKEKS VWIVQDSCTS AYESMVAYAA VEFGGLQSVL  660
TGCDSSNVAI LPSGFSILPD GIEGRPMLIR SRQEEKGTEG GSLFTMLFQM LVDASPNGKL  720
TMESVESANN IVSCTLRNIR TSLECEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995DRSKKKK
29297KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G148700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135673.10.0hypothetical protein PHAVU_010G148700g
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLV7APU80.0V7APU8_PHAVU; Uncharacterized protein
STRINGXP_007135673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]