PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G158300.1
Common NamePHAVU_010G158300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 260aa    MW: 29470.8 Da    PI: 6.7561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G158300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1293138555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h + Er+RR++i ++f  L   +P +     kK +Ka+iL +A++Y+++Lq
  Phvul.010G158300.1  93 HIISERKRRQDIAEKFIALSATIPGL-----KKIDKASILGEAIKYMRQLQ 138
                         8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.68488137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1691149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1093138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-1093142No hitNo description
Gene3DG3DSA:4.10.280.102.2E-1593149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1294143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MMEDSWQNWL SHLGMNDNFG CSSNVCFEEM VWLDNGQGCD RSNNEVGCMG MKEEHSECCC  60
SKRGVGKHEE LEEKGREKRG TKRARTSSEI EYHIISERKR RQDIAEKFIA LSATIPGLKK  120
IDKASILGEA IKYMRQLQQR IAVLEKASNN NNSAKSLIIT KSHLCSTSCE QNSNIEVEAR  180
GLENEVLIRI YCEQRKDIML NLITLLKDLH LSVTTSTVLP FGNSLLNIII VAQMSEEYNL  240
TITDLVKTLK QNLFKFCEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G158300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-85AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135786.10.0hypothetical protein PHAVU_010G158300g
TrEMBLV7AR490.0V7AR49_PHAVU; Uncharacterized protein
STRINGXP_007135786.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14964813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-36bHLH family protein