PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G160000.1
Common NamePHAVU_010G160000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 259aa    MW: 28858.3 Da    PI: 8.3016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G160000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002102124123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Phvul.010G160000.1 102 FSCNYCQRKFYSSQALGGHQNAH 124
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-699129No hitNo description
PROSITE profilePS5015711.427102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDLQRQEPCP SESLNIITFS DTMPCQKSSI DTPKKRNHTE SEDQKHPHDS IPRVLLDLSL  60
SNKDSGDDDS KPELNLLNCF HTNFSENSSE SSQGNELDPR VFSCNYCQRK FYSSQALGGH  120
QNAHKRERTL ARRGYKAGAA DFGHTYSTMP FLPSHGLYNK SLGIQVHAMI NKPSHQTPFF  180
GLCHSKGWQR QPLDSQPAIG NFRVVAETES SLADSVPKLG KFSTRLVSEG FGGFCFGSIT  240
HLKSKQEKLQ KLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G160000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135804.10.0hypothetical protein PHAVU_010G160000g
TrEMBLV7AT750.0V7AT75_PHAVU; Uncharacterized protein
STRINGXP_007135804.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-42C2H2 family protein