PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G001800.1
Common NamePHAVU_011G001800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 191aa    MW: 22122 Da    PI: 5.446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G001800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12126171655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k Lq
  Phvul.011G001800.1 126 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLHEAVAYVKFLQ 171
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.316120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-9124175No hitNo description
Gene3DG3DSA:4.10.280.106.8E-16125184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9126171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQPNSAARLP SFRSTPAAWL ESVLLKEEEE EEEEQEESEE AEKETLTFTQ LLSTIAAPSP  60
SRRQRQRQNY EIQDYPPTSM PIPNPIAPEE RDASPPHIKM DMFMFEDSAA PCRVRAKRGC  120
ATHPRSIAER VRRTRISDRI RKLQELVPNM DKQTNTADML HEAVAYVKFL QKQIEELTEH  180
QRRCRCMVQE *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G001800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925903e-91BT092590.1 Soybean clone JCVI-FLGm-11E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131294.11e-137hypothetical protein PHAVU_011G001800g
TrEMBLV7AEM81e-136V7AEM8_PHAVU; Uncharacterized protein
STRINGXP_007131294.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-37bHLH family protein