PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G008200.1
Common NamePHAVU_011G008200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 240aa    MW: 27403.4 Da    PI: 5.6746
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G008200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.26.4e-22191240151
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         k+r++Wt+eLH++Fve+v+q+ G+ + +P +ilelm+v+gLt+++v+SHLQ
  Phvul.011G008200.1 191 KARIVWTSELHRKFVEVVDQI-GPANVVPNKILELMNVPGLTRNNVASHLQ 240
                         68*******************.9***************************9 PP
2Response_reg60.21.1e-20201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl +d +p+v+e +++++++ gy ev +++++  a e++++++  ++l+l+ + mp+mdG+e+l    ++++++ +i+++  g+++ + +a
  Phvul.011G008200.1  20 VLAIDTDPSVLEFIKKICNECGY-EVMTCTESLRAAEIFRDRKesFNLVLMEVHMPNMDGYEFL---VNQKMDVHVIMMSFDGDKKSVMKA 106
                         7899*******************.***************777777*****************96...678889****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k+Ga d+  Kp +++++ +
  Phvul.011G008200.1 107 VKLGACDYWIKPLHEDRIKN 126
                         ***************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-2616140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-2917143No hitNo description
SMARTSM004482.9E-1418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.62819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.2E-1820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.75E-1821125No hitNo description
PROSITE profilePS512949.709188240IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-21189240IPR009057Homeodomain-like
SuperFamilySSF466893.05E-14189240IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-19191240IPR006447Myb domain, plants
PfamPF002493.3E-6195240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MATVSSDDKV FGQFTSNLRV LAIDTDPSVL EFIKKICNEC GYEVMTCTES LRAAEIFRDR  60
KESFNLVLME VHMPNMDGYE FLVNQKMDVH VIMMSFDGDK KSVMKAVKLG ACDYWIKPLH  120
EDRIKNMWTH IVRKSLSENK MQKNIVGNLE DDGDDQRRVI SDDSTFVFSS TVEIPREVDN  180
VGESENCGRK KARIVWTSEL HRKFVEVVDQ IGPANVVPNK ILELMNVPGL TRNNVASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-15191240150Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G008200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131372.11e-179hypothetical protein PHAVU_011G008200g, partial
TrEMBLV7AH191e-178V7AH19_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007131372.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-56response regulator 2