PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G020500.1
Common NamePHAVU_011G020500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family E2F/DP
Protein Properties Length: 322aa    MW: 35747 Da    PI: 5.1599
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.97.5e-2870152271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Phvul.011G020500.1  70 SGRGLRQFSMK---VCEKVENrGRTTYNEVADELVAEfsdpttseltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 152
                         689********...******99*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1278321IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4565158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3369152IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.3E-2571152IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.44E-2172153IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.09E-43157260IPR014889Transcription factor DP, C-terminal
SMARTSM011385.8E-70159319IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-43159273No hitNo description
PfamPF087816.2E-42160273IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MADEDDDEVL GCATTASGQS ASTSSLPPPA DNTLLKLNHL DLHADDAGSQ ASLAGKKKKR  60
GQRAVGPDKS GRGLRQFSMK VCEKVENRGR TTYNEVADEL VAEFSDPTTS ELTPDQQQYD  120
EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSVND IEEIKTERLG LRNRIEKKTA  180
YLQELEEQFV GLQNLIQRNE QLYSSGNPPS GGVSLPFILV QTRPHATVEV EISEDMQLVH  240
FDFNSTPFEL HDDNYVLKAM KFCERPQEDN TTHNFTDGGE GSSMSGLCQP QAPPTNLKVS  300
NRPPTSPPLP GILKARVKQE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-3463157193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G020500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942120.0BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131528.10.0hypothetical protein PHAVU_011G020500g
SwissprotQ9FNY21e-146DPB_ARATH; Transcription factor-like protein DPB
TrEMBLV7AD900.0V7AD90_PHAVU; Uncharacterized protein
STRINGXP_007131528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-147Transcription factor DP