PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G024600.1
Common NamePHAVU_011G024600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 479aa    MW: 52760.1 Da    PI: 6.7977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G024600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.48e-11211746910374
                GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                         e+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+taNq
  Phvul.011G024600.1 117 ECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQ 207
                         789999*******************************************************99**************************** PP

                GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                         aI++a+ege+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e l +tg+rLa+fA++lg+pfef+++  k  +  el
  Phvul.011G024600.1 208 AIYQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTEL 294
                         *************************************************....99*************************8777777779* PP

                GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                         ++L v+ +Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l  +l+++s er
  Phvul.011G024600.1 295 SQLGVRANEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALGDGLGADSLER 378
                         ***************99..777777777777....**********************.899****************************** PP

                GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         ++vE++llg ei+n+va  g +r+ + + le+W + l++aGF++v+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW
  Phvul.011G024600.1 379 HTVEQQLLGCEIRNIVAVGGPKRTGEVK-LERWADELKRAGFRAVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAW 468
                         **********************998887.************************************************************** PP

                GRAS 374 r 374
                         +
  Phvul.011G024600.1 469 Q 469
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.92182449IPR005202Transcription factor GRAS
PfamPF035142.7E-109117469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
INLSVSFYLS KIIFLSLKHL FSDTPSAQIS LSFTLTFVTF PPKFSSKPLI LSRSPPIMLQ  60
SLVPRSPRTS NTNDMKTKRT VDTVDSPADQ PSFKRTNFAA DTATEEEQAF DPQPHIECVA  120
MDKLDFANDL LPEIAELSSP FGTSPERVGA YFAQALQARV VSSCLGSYSP LTAKSVTLTQ  180
SQRIFNAFQS YNSVSPLVKF SHFTANQAIY QALEGEDRVH IIDLDIMQGL QWPGLFHILA  240
SRSKKIRSMR ITGFGSSSEL LDSTGRRLAD FASSLGLPFE FHPVEGKIGS VTELSQLGVR  300
ANEAIVVHWM HHCLYDITGS DLGTLRLLTQ LRPKLITTVE QDLSHAGSFL ARFVEALHYY  360
SALFDALGDG LGADSLERHT VEQQLLGCEI RNIVAVGGPK RTGEVKLERW ADELKRAGFR  420
AVSLRGNPAA QASLLLGMFP WRGYTLVEEN GSLKLGWKDL SLLIASAWQP SDSITYPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-16011747028380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G024600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131575.10.0hypothetical protein PHAVU_011G024600g, partial
SwissprotQ9FHZ11e-179SCL23_ARATH; Scarecrow-like protein 23
TrEMBLV7ADJ60.0V7ADJ6_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007131575.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]