PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G040800.1
Common NamePHAVU_011G040800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 258aa    MW: 28679.2 Da    PI: 6.7663
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G040800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         C+ ++++ ++lfC +++  lC+ C +++H+       H++
  Phvul.011G040800.1  4 QCDVCHKEVASLFCPSDEAALCHACDSSIHHAnkladkHKR 44
                        7****************************744477877765 PP
2zf-B_box284.5e-095692438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                        + C+ ++ek++  fC++++ llC++C ++ H g   Ht
  Phvul.011G040800.1 56 TLCDICHEKRAYVFCREDRALLCRQCDVSVH-GaneHT 92
                        68*****************************.547776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.993147IPR000315B-box-type zinc finger
CDDcd000211.10E-7333No hitNo description
PfamPF006431.2E-5444IPR000315B-box-type zinc finger
SMARTSM003361.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4853100IPR000315B-box-type zinc finger
SMARTSM003363.4E-1453100IPR000315B-box-type zinc finger
CDDcd000212.17E-956100No hitNo description
PfamPF006434.7E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKIQCDVCHK EVASLFCPSD EAALCHACDS SIHHANKLAD KHKRFSLHHP TSKATTLCDI  60
CHEKRAYVFC REDRALLCRQ CDVSVHGANE HTKTHDRFLL TGIKLGATTE ERTITTSRNS  120
KLTAQSSLSN QNIGSSRTVG VTCDSSSVPT SSISEYLIQT IPGYCMEDLL DASFASNVCS  180
KDYEQQSAFE NEDDQLQSQF TSASNLYPEI DCLVGVMEMP KAKGGEEYSN WIHSYEYPPY  240
KVPSITPPLV KRTKRSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G040800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131777.10.0hypothetical protein PHAVU_011G040800g
SwissprotQ9LQZ72e-53BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV7AI570.0V7AI57_PHAVU; Uncharacterized protein
STRINGXP_007131777.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-56salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]