PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G040800.3
Common NamePHAVU_011G040800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 190aa    MW: 20810.6 Da    PI: 7.4278
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G040800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-07444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         C+ ++++ ++lfC +++  lC+ C +++H+       H++
  Phvul.011G040800.3  4 QCDVCHKEVASLFCPSDEAALCHACDSSIHHAnkladkHKR 44
                        7****************************744478877765 PP
2zf-B_box28.72.7e-095692438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                        + C+ ++ek++  fC++++ llC++C ++ H g   Ht
  Phvul.011G040800.3 56 TLCDICHEKRAYVFCREDRALLCRQCDVSVH-GaneHT 92
                        68*****************************.547776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.993147IPR000315B-box-type zinc finger
CDDcd000216.30E-7333No hitNo description
PfamPF006437.4E-6444IPR000315B-box-type zinc finger
SMARTSM003361.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4853100IPR000315B-box-type zinc finger
SMARTSM003363.4E-1453100IPR000315B-box-type zinc finger
CDDcd000212.38E-856100No hitNo description
PfamPF006432.9E-75692IPR000315B-box-type zinc finger
Gene3DG3DSA:4.10.45.105.7E-46286IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKIQCDVCHK EVASLFCPSD EAALCHACDS SIHHANKLAD KHKRFSLHHP TSKATTLCDI  60
CHEKRAYVFC REDRALLCRQ CDVSVHGANE HTKTHDRFLL TGIKLGATTE ERTITTSRNS  120
KLTAQSSLSN QNIGSSRTVG VTCDSSSVPT SSISEYLIQT IPGYCMEDLL DASFASNVCS  180
KVCYLLNLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G040800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150394e-32AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131779.11e-137hypothetical protein PHAVU_011G040800g
SwissprotQ9LQZ76e-54BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV7AG181e-136V7AG18_PHAVU; Uncharacterized protein
STRINGXP_007131777.11e-130(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-56salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]