PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G050500.1
Common NamePHAVU_011G050500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 365aa    MW: 43010.2 Da    PI: 4.2552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G050500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-1610100197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+++       r+ +p+ f++  g++ + + ++ l+++s r+W vk   r  +++ ++ +GWk F ++n L   Df+vF++dg +ef 
  Phvul.011G050500.1  10 FFKVFLQ--EQHYERMLIPNAFVKLQGLQGRIPEDVLLRNRSERVWHVKT--RFFGDKLYFDDGWKIFHEENCLGNADFLVFRYDGVNEF- 95 
                         8888844..5555679*******99999999999****************..6666679**************************98888. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          +v+++
  Phvul.011G050500.1  96 -RVTIL 100
                         .66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-195101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-176102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.218103IPR003340B3 DNA binding domain
CDDcd100173.20E-158100No hitNo description
PfamPF023624.2E-131099IPR003340B3 DNA binding domain
SMARTSM010197.2E-1310103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-6278359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-6309360IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSGAEKYPDF FKVFLQEQHY ERMLIPNAFV KLQGLQGRIP EDVLLRNRSE RVWHVKTRFF  60
GDKLYFDDGW KIFHEENCLG NADFLVFRYD GVNEFRVTIL EISTQCEKTL VKIEEEEEGN  120
EEERAAAQVE ETVITQEEQA EDCDIEDEED SQDQDYDDDN DDSDFDDHDH DDDDDENTEM  180
EEESEEENSV GPVGYASQHY RKPYRRDTAS SSYPQTEEDT FKDDEFDPEM CIQPENNFFE  240
AKLYRSRPNE LHIPGIAIQD FSLSFPEKIT LKCCQHCQRK DIQRNQLQDY HLNLAQQAPI  300
RKRYLEVTGK VCRWQDDRIC IKGWANFSRR NKIKNNDVCI CEVISGEDQV VRTFLVHVIG  360
TRRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G050500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-153AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131904.10.0hypothetical protein PHAVU_011G050500g
TrEMBLV7AGC20.0V7AGC2_PHAVU; Uncharacterized protein
STRINGXP_007131904.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-14B3 family protein