PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G050600.2
Common NamePHAVU_011G050600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 405aa    MW: 45924.4 Da    PI: 8.8359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G050600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-128693297
                        --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         s  +tl  ++g +W+v l  +k +++y++ +GW+eF +   + +g  +vF+++g+s+f  +v+vf
  Phvul.011G050600.2  8 LSPIVTLSVPDGSVWRVGL--KKADNKYWFLDGWQEFIQHYSIGVGYLLVFRYEGKSSF--NVHVF 69
                        455799999**********..*********************************99999..77777 PP
2B356.54.9e-18273363498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l 
  Phvul.011G050600.2 273 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQ 358
                         78899******************877743...59**************665555..66***********************9988888899 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         v++fr
  Phvul.011G050600.2 359 VSIFR 363
                         99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-16170IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.022172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365172IPR003340B3 DNA binding domain
CDDcd100175.05E-13170No hitNo description
SuperFamilySSF1019367.85E-16270IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-9869IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-24262363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-25263364IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-22268363No hitNo description
SMARTSM010193.6E-16270365IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803270365IPR003340B3 DNA binding domain
PfamPF023625.0E-16273363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRKYGRELSP IVTLSVPDGS VWRVGLKKAD NKYWFLDGWQ EFIQHYSIGV GYLLVFRYEG  60
KSSFNVHVFN LATSEINYQS AMRCSNEGPH FANLLKFFEE MDDEDSIEIL DSSPSHLAPS  120
SLQNKVLAGS VDKMSPAKCY TPPALQNLFN GSKLNSINWG EGGDAHCSKS VNSLDNLLTR  180
DIGVQFNAVE FKKSTEELKL RASMEERMKK TARKKRKSEG QEASAEQEEE VEMRFRFYES  240
ASARKRTVTA EERERAINAA KAFEPPNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLNGVS  300
GFIKLQISNG RQWPVRCLYR GGRAKLSQGW FEFSLENNLG EGDVCVFELL RMKEVVLQVS  360
IFRITEDVGL LSPPPLQQNQ KMSSAKLLNT PLQQHLTSTK IIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-7223636815146B3 domain-containing transcription factor VRN1
4i1k_B5e-7223636815146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G050600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131906.10.0hypothetical protein PHAVU_011G050600g
SwissprotQ8L3W11e-120VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLV7AF480.0V7AF48_PHAVU; Uncharacterized protein
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-109B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]