PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G050700.1
Common NamePHAVU_011G050700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 341aa    MW: 39032.4 Da    PI: 8.8681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G050700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1611102199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffk++       s+++ +pk+f+++ +++   s   +l   +sg++W+v +   kk++ +++++GW eFv +n +  ++f++F+++g+++f
  Phvul.011G050700.1  11 FFKIF--LPEQDSHIMKVPKEFLKHLDED--LSSNAVLSGpSSGEQWQVSV--LKKGNDVYMQNGWPEFVTDNLVVLNEFLLFTYHGDNCF 95 
                         78888..566677899*******655644..6668888886888*******..************************************** PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                           +v++f k
  Phvul.011G050700.1  96 --HVQIFGK 102
                         ..****987 PP
2B360.52.8e-19240335299
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         +  +t+s+v   ++l +  +fa+++  +      k++ + + +g sW+v+++  +++++r   lt+GW +Fv++n+L  gD+++F+l+  +
  Phvul.011G050700.1 240 KHLMTKSNVEDCCILPIATEFARKYipE----AVKQIHIGNCKGTSWKVQVNCfKNQDRRyAQLTTGWVNFVRENKLMRGDTCIFELE--E 324
                         567899999999*************443....345799*************554777777678***********************85..6 PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         +f+++v++fr+
  Phvul.011G050700.1 325 DFHFRVHIFRT 335
                         8888*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-226103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-217104IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-159100No hitNo description
SMARTSM010197.2E-1511103IPR003340B3 DNA binding domain
PfamPF023621.5E-1311102IPR003340B3 DNA binding domain
PROSITE profilePS5086312.25224103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-23230338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21232337IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-10239336IPR003340B3 DNA binding domain
PROSITE profilePS5086313.465239336IPR003340B3 DNA binding domain
PfamPF023623.7E-16242335IPR003340B3 DNA binding domain
CDDcd100171.81E-17243334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTSGAKKYPH FFKIFLPEQD SHIMKVPKEF LKHLDEDLSS NAVLSGPSSG EQWQVSVLKK  60
GNDVYMQNGW PEFVTDNLVV LNEFLLFTYH GDNCFHVQIF GKNGLERLCL RETRQEQAAA  120
IPKNSTQTFA GLSPHKSKSC KRDTPFSNKD FIFTGCETME TRQKQTATPS LATTKKNKER  180
KFSPGASHLQ ESKSYQQDLS FSNKASLPKD FPTPQHSIEI ESSKAWKLAE SFTSCNPHWK  240
HLMTKSNVED CCILPIATEF ARKYIPEAVK QIHIGNCKGT SWKVQVNCFK NQDRRYAQLT  300
TGWVNFVREN KLMRGDTCIF ELEEDFHFRV HIFRTSCAPR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G050700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131907.10.0hypothetical protein PHAVU_011G050700g
RefseqXP_007131908.10.0hypothetical protein PHAVU_011G050700g
TrEMBLV7AIH40.0V7AIH4_PHAVU; Uncharacterized protein
STRINGXP_007131907.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-24B3 family protein