PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G058600.1

Common Name

PHAVU_011G058600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 332aa MW: 37482 Da PI: 7.6359

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G058600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	171	190	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+F+r n++ H+ Phvul.011G058600.1 171 FACPLCFKTFNRYNNMQMHM 190 78*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	171	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.619	171	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.88E-5	237	275	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-4	241	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MTNSYRSNDL NFWLDLNSPC LLSSPSASTP PINPSFYFPS NYHTYTTVIS STQFQSSPPQ 60 TEALPFLHLR HQEEEAQYLQ SSFSAMEVDK KKEDLSTSKC LDEEDAVTVA LHLGLPSTSA 120 SADSASSLYS AEVSDKEEKI SDASGLLSDR INKGQYWIPT SAQILIGPTQ FACPLCFKTF 180 NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCKNNIDH PRAKPLKDFR 240 TLQTHYKRKH GTKPFVCRKC CKTFAVRGDW RTHEKNCGKR WYCSCGSDFK HKRSLKDHIK 300 AFGYEHTAHG NDCMNLDQDD DQAGSEIEQE N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G058600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132003.1	0.0	hypothetical protein PHAVU_011G058600g
Swissprot	Q8W031	1e-118	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	V7AEI6	0.0	V7AEI6_PHAVU; Uncharacterized protein
STRING	XP_007132003.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G058600.1
Entrez Gene	18615292

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]