PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G063200.2

Common Name

PHAVU_011G063200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

GRAS

Protein Properties

Length: 512aa MW: 58662.4 Da PI: 7.8302

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G063200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.7	1e-117	134	508	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yf++AL+arl++ ++ + + ++++ + +e l+a+++f +sP+ Phvul.011G063200.2 134 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANALEARLVGDGTVAQGTYSFLTSKRFSAAEFLKAYQVFLSASPFK 224 6899************************************************96665555556666665669************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN++I++a++++e++HiiDf+i +G++Wp L++ L++R++gpp+lRiTg++ p++g +e++eetg+rLa+++++ +vpfe+n+ Phvul.011G063200.2 225 KFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSNREGGPPKLRITGIEFPQPGfrPTERIEETGSRLANYCKRYNVPFEYNA 315 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++++++e++++e+L+++++E +aVn++++ ++lldes +++s+r++vL+l+++++P++++++ + ++n++ F++rf eal +ysa++d+ Phvul.011G063200.2 316 IASRNWETIQVEALKIQSNELVAVNCHMRFENLLDESIEVNSPRNAVLQLIRKINPDIFTHSITNGSYNAPFFATRFREALFHYSAIYDMC 406 9999*********************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++ +pre+e+r ++Erellgre++nv+aceg+er er et+++W++r ++aGFk++pl+++ +++ ++ l++ + + + +e+++++++gW Phvul.011G063200.2 407 DTVIPRENEWRLMIERELLGREAMNVIACEGSERLERPETYKQWQARNTRAGFKQLPLNKELMAKFRTKLKEWYHRDFVFDEDNNWMLQGW 497 **********************************************************************999********** PP GRAS 363 kdrpLvsvSaW 373 k+r L++ ++W Phvul.011G063200.2 498 KGRILYASTCW 508 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.091	108	489	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-115	134	508	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MKILFRRGLE EASKFLPPGP NLVTGLDSNG EQGFNKFGET SYGLRSGKNH KRDERYAIEE 60 EEEEEEEGRS NKQSALSHAD ESDLSDAFDR VLLHEGNMCS EISSLPGGAV KVDEPDGGKS 120 RSRKPGRNKE TVDLRNLLLM CSQSVYANDN RTANELLKQI RQHSSPFGDA SQRLAHYFAN 180 ALEARLVGDG TVAQGTYSFL TSKRFSAAEF LKAYQVFLSA SPFKKFTYFF ANKMIMKAAA 240 KAETIHIIDF GILYGFHWPI LIKFLSNREG GPPKLRITGI EFPQPGFRPT ERIEETGSRL 300 ANYCKRYNVP FEYNAIASRN WETIQVEALK IQSNELVAVN CHMRFENLLD ESIEVNSPRN 360 AVLQLIRKIN PDIFTHSITN GSYNAPFFAT RFREALFHYS AIYDMCDTVI PRENEWRLMI 420 ERELLGREAM NVIACEGSER LERPETYKQW QARNTRAGFK QLPLNKELMA KFRTKLKEWY 480 HRDFVFDEDN NWMLQGWKGR ILYASTCWVP A*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MKILFRRGLE EASKFLPPGP NLVTGLDSNG EQGFNKFGET SYGLRSGKNH KRDERYAIEE  60
EEEEEEEGRS NKQSALSHAD ESDLSDAFDR VLLHEGNMCS EISSLPGGAV KVDEPDGGKS  120
RSRKPGRNKE TVDLRNLLLM CSQSVYANDN RTANELLKQI RQHSSPFGDA SQRLAHYFAN  180
ALEARLVGDG TVAQGTYSFL TSKRFSAAEF LKAYQVFLSA SPFKKFTYFF ANKMIMKAAA  240
KAETIHIIDF GILYGFHWPI LIKFLSNREG GPPKLRITGI EFPQPGFRPT ERIEETGSRL  300
ANYCKRYNVP FEYNAIASRN WETIQVEALK IQSNELVAVN CHMRFENLLD ESIEVNSPRN  360
AVLQLIRKIN PDIFTHSITN GSYNAPFFAT RFREALFHYS AIYDMCDTVI PRENEWRLMI  420
ERELLGREAM NVIACEGSER LERPETYKQW QARNTRAGFK QLPLNKELMA KFRTKLKEWY  480
HRDFVFDEDN NWMLQGWKGR ILYASTCWVP A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-55	117	510	1	379	Protein SCARECROW
5b3h_D	2e-55	117	510	1	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G063200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132055.1	0.0	hypothetical protein PHAVU_011G063200g
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	V7AET1	0.0	V7AET1_PHAVU; Uncharacterized protein
STRING	XP_007132056.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Phvul.011G063200.2
Entrez Gene	18615339

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]