PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G064800.1

Common Name

PHAVU_011G064800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 310aa MW: 33520.5 Da PI: 9.8106

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G064800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	67	127	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Phvul.011G064800.1 67 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 127 57889*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-34	51	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-33	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MVFSSIPVFV DPPNWQQQQN HPQANGSDNT QLLPPLPPQQ THVGGSVGSI RPGSMADRAR 60 LAKIPPPEAA LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC 120 RRNKKNKRSR SKSPASSEKQ TLSASSGALP SAGNTHELIN QLPQPPNLPF MASLQNLNLN 180 RYAVGNMGLG LREIHGQNDH MGFQIGGSGN SSAGGGMDQW RLQQIPFLNG FESASAGSYH 240 FQNESIETPS GLVGDLATNS RVSQIPSVKM EESGALNLSR TPLNVSENNH YYSWTDMSGL 300 SSSSASHLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G064800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132074.1	0.0	hypothetical protein PHAVU_011G064800g
TrEMBL	V7AGT5	0.0	V7AGT5_PHAVU; Uncharacterized protein
STRING	XP_007132074.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-42	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Phvul.011G064800.1
Entrez Gene	18615355