PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G066800.1
Common NamePHAVU_011G066800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 140aa    MW: 15590.2 Da    PI: 10.2284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G066800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000272648123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C+k F++   L  H  +H
  Phvul.011G066800.1 26 FKCKTCDKQFPSFQALGGHRASH 48
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.052648IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.81E-82690No hitNo description
PROSITE profilePS501579.9722653IPR007087Zinc finger, C2H2
PfamPF139123.0E-122650IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM003550.186890IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-96891IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSKCLMLVEE VGEGASRERV VKSGEFKCKT CDKQFPSFQA LGGHRASHKK LKRMASNLPC  60
SVVTPKLHQC SICGLVFGIG QALGGHMRKH RVSSIHHHHQ DLPKSSATKN LRFCFDLNLT  120
PYENHLNLNL RTPVSHLFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G066800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132100.12e-99hypothetical protein PHAVU_011G066800g
TrEMBLV7AEX55e-98V7AEX5_PHAVU; Uncharacterized protein
STRINGXP_007132100.18e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-31C2H2 family protein