PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G067000.1
Common NamePHAVU_011G067000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 200aa    MW: 22352.4 Da    PI: 4.5248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G067000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-122341448
                        HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++ ++G++ W++Iar+++ gRt++++k++w++++
  Phvul.011G067000.1  2 ELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTHM 34
                        789******.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-15135IPR009057Homeodomain-like
PROSITE profilePS5129421.315138IPR017930Myb domain
SuperFamilySSF466892.26E-9239IPR009057Homeodomain-like
SMARTSM007170.0056236IPR001005SANT/Myb domain
PfamPF002493.6E-10233IPR001005SANT/Myb domain
CDDcd001674.56E-8234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MELHSKWGNR WSRIARKLPG RTDNEIKNFW RTHMRKKKAL EKKRASSSSS SSSSSPVSSS  60
SLSSPSSSNH AADSHGSKEV GEESFYDTGG CDDIMGLIGA GDEEGGEKGY SLDDIWEDIV  120
MSEEKDMYDI LQPVYEGHSE EGCNFSCPYP MIYSPSSWEY NSSHPLWVMD EEESSKMLFP  180
TLTDQYYSCY EQGNAFLTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G067000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-58AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132104.11e-146hypothetical protein PHAVU_011G067000g
TrEMBLV7AGW61e-144V7AGW6_PHAVU; Uncharacterized protein
STRINGXP_007132104.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.26e-35myb domain protein 48