PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G071100.2
Common NamePHAVU_011G071100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 471aa    MW: 51744.2 Da    PI: 7.0286
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G071100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17147196155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Phvul.011G071100.2 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-16147205IPR016177DNA-binding domain
PfamPF008475.3E-9147196IPR001471AP2/ERF domain
SMARTSM003804.0E-32148210IPR001471AP2/ERF domain
CDDcd000181.27E-11148206No hitNo description
PROSITE profilePS5103217.662148204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17148205IPR001471AP2/ERF domain
CDDcd000182.98E-13239284No hitNo description
SuperFamilySSF541712.16E-6239283IPR016177DNA-binding domain
SMARTSM003801.1E-12240288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLDLNLNAEW TDSARDGDSP LPLEKFPEGS RNQMAESGTS NSSVVNADGS SNGGCDEDSC  60
STRADDVYTF NFDILKVEGA SDVVTKELFP VSEGVATSSF SARKGFVDLA FDREGGNSEI  120
KMLQPQPQTQ TQQPAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGVNAD INFNLSDYED DFKQMKNLSK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN FEPSAYEGEI KSAAINEVGN  300
QNLDLNLGIA TPGPSPKENW EQLQFASVHY NTHGGISSMM ETNVNSGIGN PSLKRLVVSE  360
DCPSVWNGTC SSFFPNEEKT ERMNMDHSKG FPNWAWQTHA QVNATPVPTF SAAAASSGFS  420
ISATFPPTAT FPTRSMNCNP HQSLCFTSSS AHSSNASEYY YQVKPPQAPL *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G071100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132161.10.0hypothetical protein PHAVU_011G071100g
SwissprotQ9SK031e-125RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV7AFY00.0V7AFY0_PHAVU; Uncharacterized protein
STRINGXP_007132160.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-122related to AP2.7