PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G074100.1
Common NamePHAVU_011G074100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 542aa    MW: 60345.6 Da    PI: 8.7645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G074100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-056991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Phvul.011G074100.1 69 FICEICKKGFQRDQNLQLHRRGH 91
                        89*******************88 PP
2zf-C2H211.10.0012146168123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H + +
  Phvul.011G074100.1 146 WKCDKCSKKYAVQSDWKAHSKIC 168
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-76891No hitNo description
PROSITE profilePS5015710.5336991IPR007087Zinc finger, C2H2
SMARTSM003550.056991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035578111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-7141166No hitNo description
SMARTSM00355150146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MMSEESFSVP PNTVRDSLVH VQPPSSNPNN NPNPSSNPAK RRRSLPGTPD PDAEVVVLSP  60
KSLMATNRFI CEICKKGFQR DQNLQLHRRG HNLPWKLKQR TNKDQVRKKV YVCPEKSCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SVRLTTVPAA LSNLRKDHHL TNAQASRIPQ IFSGFHSDQL  240
GGSGTLEPLV NYADADHHHH NHNHQQQQQQ KLRLPLWLDH QANPQVFHHP LINFPTKTSA  300
FTSSGPNPVL DGVQTMDMFG PQFVNYRCPE ASFGGANLSV LPPHGLKQEQ EENKGDLSHS  360
AGSNLYLSSN QNPPHYMSAT TLWQKTVQMG SMRVNDNTFR SIGSNRNSNH NNAVNNVVVE  420
VQKLDELVSV EGCTNLGGGG GYLLNDDSNN SFVVVNGTKG LEHMVMPVDE ETPASIMGKQ  480
LHSISSHNKN QLGLTRDFLG VGDNNIESIR RPFFQQDLVE FNAMGSASAM NLQSQYGGHY  540
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36142207368Zinc finger protein JACKDAW
5b3h_F3e-36142207368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195108KLKQRTNKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G074100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132196.10.0hypothetical protein PHAVU_011G074100g
TrEMBLV7AG150.0V7AG15_PHAVU; Uncharacterized protein
STRINGXP_007132196.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-101C2H2-like zinc finger protein