PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G082500.1

Common Name

PHAVU_011G082500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

TCP

Protein Properties

Length: 167aa MW: 18021.4 Da PI: 7.6834

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G082500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.9	9e-31	20	116	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 ++++++hTkv+gR RRv l+ +caar+F+L++eLG+++ ++ti WLl+qa+p+i+ +tgt+ s+++ ++ss ss+s + Phvul.011G082500.1 20 RSKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPSMVDVTSSSPSSSS----Psslptlpl 106 579*********************************************************888882221111112222....111224333 PP TCP 89 .........k 89 + Phvul.011G082500.1 107 psegdnvvgQ 116 3333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-26	21	115	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.805	22	76	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASKTPLPLQ ATNTKLPSLR SKKDRHTKVN GRERRVLLPP LCAARIFQLT RELGYKTHGE 60 TIGWLLRQAE PSIISATGTG ISPSMVDVTS SSPSSSSPSS LPTLPLPSEG DNVVGQHASS 120 VHLSTDNEIN SKETFPPFDF DVFANFNVEF SAAEIEMLQS LMTRLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G082500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132292.1	1e-119	hypothetical protein PHAVU_011G082500g
Swissprot	Q53PH2	1e-27	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	V7AJL7	1e-117	V7AJL7_PHAVU; Uncharacterized protein
STRING	XP_007132292.1	1e-118	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G082500.1
Entrez Gene	18615538