PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G086400.1
Common NamePHAVU_011G086400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 306aa    MW: 32683.4 Da    PI: 8.5779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G086400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007138160123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Phvul.011G086400.1 138 YECKTCNRTFPSFQALGGHRASH 160
                         99**********99999998887 PP
2zf-C2H213.60.00019214236123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Phvul.011G086400.1 214 HECSICGSEFSSGQALGGHMRRH 236
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.7E-13138162IPR007087Zinc finger, C2H2
SuperFamilySSF576676.65E-9138160No hitNo description
SMARTSM003550.052138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576676.65E-9209236No hitNo description
PfamPF139121.3E-11214238IPR007087Zinc finger, C2H2
SMARTSM003550.02214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097214241IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEMEGLYSNS NSNSNSSSTQ SNIAKGKRTK RMRLLSPSGV VVASTAATGV TATSCSSPNS  60
GGSSTTTYES EEEDMANCLI LLAQGGEPHR HQPRHHKQRV EDHGLGDCNG VKTGKGNGNT  120
TNTAATTAVN TKVGFFIYEC KTCNRTFPSF QALGGHRASH KKPKLVGEEK KTPPSQLQHM  180
FVTKYDRFEE DNVKSGPPIS LQLGHGNNSK GKIHECSICG SEFSSGQALG GHMRRHRAST  240
NTSTVDTSSN TVTTAVAATV SPPRNILQLD LNLPAPEDDI REAKFQFPVT TQMLVGTPAL  300
VDCLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G086400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132339.10.0hypothetical protein PHAVU_011G086400g
TrEMBLV7AHJ50.0V7AHJ5_PHAVU; Uncharacterized protein
STRINGXP_007132339.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-46C2H2 family protein