PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G091400.1
Common NamePHAVU_011G091400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 223aa    MW: 24412.2 Da    PI: 5.1008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G091400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-164595155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++   ++Wv+eIr+p     +  r+++g++ t+e+Aa+a++ a ++l+g
  Phvul.011G091400.1 45 PVYRGVRQRN-GNKWVCEIREPI----KkSRIWVGTYPTPEMAARAHDVAVLALNG 95
                        68*****999.9*********72....35*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-124595IPR001471AP2/ERF domain
SMARTSM003801.3E-2446109IPR001471AP2/ERF domain
PROSITE profilePS5103220.66646103IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1946105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-2746105IPR001471AP2/ERF domain
CDDcd000183.57E-2747105No hitNo description
PRINTSPR003672.9E-74758IPR001471AP2/ERF domain
PRINTSPR003672.9E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDIENNESPC STSLSPPNPN PQPSNANPSH KRKAGRKKFR ETRHPVYRGV RQRNGNKWVC  60
EIREPIKKSR IWVGTYPTPE MAARAHDVAV LALNGISANF NFPDSVSLLP LAKSCSAPDI  120
REAAKAATLD QAFIPIPNTA FSSSSHGNSN FEENGNGEDS CLSISMQNDE SETVFFDEEA  180
LYNMPGLLDS MAEGLLITPP STKTALDWDH IGSEIDLTLW NN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G091400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132398.11e-165hypothetical protein PHAVU_011G091400g
SwissprotA2WZI42e-51DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-51DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLV7AFM41e-164V7AFM4_PHAVU; Uncharacterized protein
STRINGXP_007132398.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-50C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]