PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G094600.1
Common NamePHAVU_011G094600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YB
Protein Properties Length: 152aa    MW: 16818.6 Da    PI: 4.8309
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G094600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB37.55.7e-12598694
               NF-YB  6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                        ++lP + v r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ i+++d++ al +  f ++v plk+ l+++r+ 
  Phvul.011G094600.1  5 EELPRTIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICREAKRQIITAEDVFKALEETEFSEFVRPLKASLEEFRKK 97
                        6788889999999888622234541156788888899999***************************************************86 PP

               NF-YB 94 e 94
                        +
  Phvul.011G094600.1 98 N 98
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-303136IPR009072Histone-fold
PfamPF008083.8E-7675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.56E-227121IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAEAEELPRT IVRRVVKDKL SRCSEEGEIS VSKDGLLAFS ESGRIFIHYL SATANDICRE  60
AKRQIITAED VFKALEETEF SEFVRPLKAS LEEFRKKNVG KKAAVSKGKE DESRKKRKLE  120
AESSDKGEAS NNDESSDKGE GSDKGEGEDN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A4e-12712418130DNA polymerase epsilon subunit D
5y27_A4e-12712418130DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194116RKKNVGKKAAVSKGKEDESRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G094600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132441.11e-102hypothetical protein PHAVU_011G094600g
TrEMBLV7AGM91e-101V7AGM9_PHAVU; Uncharacterized protein
STRINGXP_007132441.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.19e-41nuclear factor Y, subunit B11