PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G095500.1
Common NamePHAVU_011G095500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 230aa    MW: 26218.4 Da    PI: 6.6784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G095500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.91.3e-4291402127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         ppGfrF Pt+eelv +yL++k+eg +    +++vi+ vdi+ +ePw+Lp+     +++++++w+fFs+ ++++a+g r++r+t+ gyWkat
  Phvul.011G095500.1   9 PPGFRFFPTEEELVGFYLHNKLEGLRnaAAIDRVIPVVDINALEPWNLPTlageLCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKAT 99 
                         8***********************9965556678***************545654445777****************************** PP

                 NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         g+   v+s++++++g+kk++vfykg+ap g+kt+W m+ey+
  Phvul.011G095500.1 100 GSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYK 140
                         ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-445165IPR003441NAC domain
PROSITE profilePS5100544.1558167IPR003441NAC domain
PfamPF023657.8E-239140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTNIMEDHPP GFRFFPTEEE LVGFYLHNKL EGLRNAAAID RVIPVVDINA LEPWNLPTLA  60
GELCRGDTEQ WFFFSPGQER EARGGRPSRT TACGYWKATG SPGYVYSSDN RVIGVKKSMV  120
FYKGKAPMGR KTKWKMNEYK AISVPHQSNS VIPELRCEFS LYRVYIVSGT FRAFDRRPSE  180
SEGTESRVHQ SSSQISQLPE GGDSSSTNWN QVQLQEPLWD LEWEHFNWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-30916518163NO APICAL MERISTEM PROTEIN
1ut4_B5e-30916518163NO APICAL MERISTEM PROTEIN
1ut7_A5e-30916518163NO APICAL MERISTEM PROTEIN
1ut7_B5e-30916518163NO APICAL MERISTEM PROTEIN
3swm_A7e-30916521166NAC domain-containing protein 19
3swm_B7e-30916521166NAC domain-containing protein 19
3swm_C7e-30916521166NAC domain-containing protein 19
3swm_D7e-30916521166NAC domain-containing protein 19
3swp_A7e-30916521166NAC domain-containing protein 19
3swp_B7e-30916521166NAC domain-containing protein 19
3swp_C7e-30916521166NAC domain-containing protein 19
3swp_D7e-30916521166NAC domain-containing protein 19
4dul_A5e-30916518163NAC domain-containing protein 19
4dul_B5e-30916518163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G095500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-106AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132453.11e-172hypothetical protein PHAVU_011G095500g
SwissprotQ9FMR36e-80NAC90_ARATH; NAC domain-containing protein 90
TrEMBLV7AFR81e-171V7AFR8_PHAVU; Uncharacterized protein
STRINGXP_007132453.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-82NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]