PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G095500.2

Common Name

PHAVU_011G095500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 193aa MW: 22142.1 Da PI: 9.1577

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G095500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.6	1.6e-25	28	103	52	127
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++++w+fFs+ ++++a+g r++r+t+ gyWkatg+ v+s++++++g+kk++vfykg+ap g+kt+W m+ey+ Phvul.011G095500.2 28 RGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYK 103 456779*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.122	1	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.05E-25	25	128	IPR003441	NAC domain
Pfam	PF02365	3.9E-12	32	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MLFVRVLCMI HSFFIKWLFA ALAGELCRGD TEQWFFFSPG QEREARGGRP SRTTACGYWK 60 ATGSPGYVYS SDNRVIGVKK SMVFYKGKAP MGRKTKWKMN EYKAISVPHQ SNSVIPELRC 120 EFSLYRVYIV SGTFRAFDRR PSESEGTESR VHQSSSQISQ LPEGGDSSST NWNQVQLQEP 180 LWDLEWEHFN WV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-18	14	114	57	152	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-18	14	114	57	152	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-18	14	114	57	152	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-18	14	114	57	152	NO APICAL MERISTEM PROTEIN
3swm_A	6e-18	14	114	60	155	NAC domain-containing protein 19
3swm_B	6e-18	14	114	60	155	NAC domain-containing protein 19
3swm_C	6e-18	14	114	60	155	NAC domain-containing protein 19
3swm_D	6e-18	14	114	60	155	NAC domain-containing protein 19
3swp_A	6e-18	14	114	60	155	NAC domain-containing protein 19
3swp_B	6e-18	14	114	60	155	NAC domain-containing protein 19
3swp_C	6e-18	14	114	60	155	NAC domain-containing protein 19
3swp_D	6e-18	14	114	60	155	NAC domain-containing protein 19
4dul_A	6e-18	14	114	57	152	NAC domain-containing protein 19
4dul_B	6e-18	14	114	57	152	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G095500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-112	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132454.1	1e-143	hypothetical protein PHAVU_011G095500g
Swissprot	Q9FMR3	2e-58	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V7AHU6	1e-142	V7AHU6_PHAVU; Uncharacterized protein
STRING	XP_007132453.1	1e-125	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-66	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Phvul.011G095500.2
Entrez Gene	18615672

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]