PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G100300.1
Common NamePHAVU_011G100300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family YABBY
Protein Properties Length: 184aa    MW: 20458.2 Da    PI: 8.1536
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G100300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY223.55.7e-6961605170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                          ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+  + q+ + ++       ++++++l +ee + k+  +++++ ++ 
  Phvul.011G100300.1   6 MATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQEP------QSQKQHLSFEEPSSKELGSSSSKCNKI 90 
                         689***********************************************99999885......334455555555555554444333333 PP

               YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +     e  ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl
  Phvul.011G100300.1  91 AAF----EAVEHEQPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 160
                         333....456778899999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.3E-737160IPR006780YABBY protein
SuperFamilySSF470951.57E-7105153IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.0E-4113154IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSMEMMATER VCYVHCNFCN TILAVSVPYS SLLTIVTVRC GHCANLLSVN MGASLQAFPP  60
QEPQSQKQHL SFEEPSSKEL GSSSSKCNKI AAFEAVEHEQ PRIPPIRPTE KRHRVPSAYN  120
RFIKEEIQRI KASNPDISHR EAFSSAAKNW AHFPHIHFGL KLDGNSQAKL DQGEAAEKSN  180
GFY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G100300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908110.0BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132510.11e-136hypothetical protein PHAVU_011G100300g
SwissprotQ9XFB04e-81YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLV7AG161e-134V7AG16_PHAVU; Uncharacterized protein
STRINGXP_007132510.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-80YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]