PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G109800.1
Common NamePHAVU_011G109800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 225aa    MW: 25866 Da    PI: 6.4058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G109800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ eEd++l  +v+ +G  +W+  ++  g+ R++k+c++rw++yl
  Phvul.011G109800.1 14 KGAWSREEDDKLRAYVQIYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding57.53.1e-1868112248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g+ TteE+e ++++++++G++ W++Ia++++ gRt++++k++w+++l
  Phvul.011G109800.1  68 GNYTTEEEETIIKLHQEFGNR-WSLIAEKLP-GRTDNEVKNYWHSHL 112
                         789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.789961IPR017930Myb domain
SuperFamilySSF466892.17E-3011108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231568IPR009057Homeodomain-like
CDDcd001678.43E-101661No hitNo description
PROSITE profilePS5129425.64462116IPR017930Myb domain
SMARTSM007172.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1668112IPR001005SANT/Myb domain
CDDcd001672.33E-1269112No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVRTPSYDKN GLKKGAWSRE EDDKLRAYVQ IYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TTEEEETIIK LHQEFGNRWS LIAEKLPGRT DNEVKNYWHS HLKKSLKSNE  120
MTPSELKSKP NESFEYEKSE NLGANSGDIF PHILESSLAR DNYLATTNAE EDGVPPLVSH  180
KEFSGDFWSE PFLVEDSLDT FKDEIWSGKG MALLLPNFDG AYLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G109800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-59AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132613.11e-167hypothetical protein PHAVU_011G109800g
TrEMBLV7AG661e-165V7AG66_PHAVU; Uncharacterized protein
STRINGXP_007132613.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-58myb domain protein 14