PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G109900.1
Common NamePHAVU_011G109900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 188aa    MW: 21315.4 Da    PI: 4.6928
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G109900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-1230641248
                        HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        l d+++++G++ W++Ia+ +  gRt++++k++w+++l
  Phvul.011G109900.1 30 LTDLHQKHGNK-WSLIAENLH-GRTDNEIKNYWHSHL 64
                        789********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6691468IPR017930Myb domain
SMARTSM007172.0E-51866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-173065IPR009057Homeodomain-like
CDDcd001671.14E-73064No hitNo description
PfamPF002491.0E-103064IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-113077IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MWKKLQTSMD ELPAPKSKTR ELYPQGRPNL TDLHQKHGNK WSLIAENLHG RTDNEIKNYW  60
HSHLKKFQNS NMNTSCDEDL KSIGCKDFEM ATNEALGVES LHILESSVSI SSETSYTDHN  120
SPSLSSSSSH TESTMNLCKE EESVASLETL DSGFSSSFWT EPFISENALD QDYFPISSYM  180
SEPFYLW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G109900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-170AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132614.11e-136hypothetical protein PHAVU_011G109900g
TrEMBLV7AIC11e-135V7AIC1_PHAVU; Uncharacterized protein
STRINGXP_007132614.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-14myb domain protein 14