PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G119500.1
Common NamePHAVU_011G119500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 209aa    MW: 23674 Da    PI: 7.0464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G119500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-101663655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                          +E++RR++++  f++L +llP+ +   p++ l   + + +A++YIksL+
  Phvul.011G119500.1 16 RLVEKNRRNQMKILFNKLNSLLPSyN---PKEVLPLPDQVDEAINYIKSLE 63
                        679*********************66...8888****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.61E-5867No hitNo description
SuperFamilySSF474594.58E-12977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8331062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-111378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-61663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0021668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDRLGIQPSS TKVERRLVEK NRRNQMKILF NKLNSLLPSY NPKEVLPLPD QVDEAINYIK  60
SLEAKVKMAQ EKKESLQGIK KRSHGCFSSS RATFAATRLP KSPQLEIQEV GSSLQVVLIT  120
GIDHQFIFCE IIRMLHEENI EVRSANSSLT GDSVLHVVHA EIPQSFLQLG AAKVSERLKR  180
FVNGSNSDVE TQDEWWDFDN CSDDMWGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983KKRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G119500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-120AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132724.11e-154hypothetical protein PHAVU_011G119500g
TrEMBLV7AIP91e-153V7AIP9_PHAVU; Uncharacterized protein
STRINGXP_007132724.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-37bHLH family protein