PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G123200.1
Common NamePHAVU_011G123200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 468aa    MW: 51226.5 Da    PI: 9.3164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G123200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-056686323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ Cgk F r  nL+ H r H
  Phvul.011G123200.1 66 CETCGKGFQRDQNLQLHRRGH 86
                        *******************88 PP
2zf-C2H213.50.00021140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Phvul.011G123200.1 140 WKCEKCSKRYAVQSDWKAHSKTC 162
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-66386No hitNo description
Gene3DG3DSA:3.30.160.608.3E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5936486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-6135160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLRKMDEGEI ITNAFPQNLT ASAASNSSNP PPALKRKRNL PGNPDPEAEV VALSPKTLMA  60
TNRFLCETCG KGFQRDQNLQ LHRRGHNLPW KLKQRTGKEA RKRVYVCPEK SCVHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYKCD CGTIFSRRDS  180
FITHRAFCDA LAEETARVNA SSDINASLGR NIGYNVIGTS LGPNMATHFS SIFKPVSSTE  240
ETSNQTSRGL PLWMGQTSPQ AQETMVNNNL SEIHQLGSVT SSETAYGGNS LVQCSNFPPS  300
NYQLSWVFGT KLSNDSNIQK LTTSTTTSLP LVNSSVPSLY SSQHQPRQTC STANMSATAL  360
LQKAAQIGSS SSDPSWLESI GLKCGSSTQG QDGNISNKFS GMYGSSLVLS TLGTEPDNSA  420
SDLSQMHPPK RRHVLNEENG GGQFRDFLGV GVQNHLPHFI NQRVDLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36136205372Zinc finger protein JACKDAW
5b3h_F2e-36136205372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G123200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132765.10.0hypothetical protein PHAVU_011G123200g
SwissprotQ9ZWA61e-137IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLV7AGT30.0V7AGT3_PHAVU; Uncharacterized protein
STRINGXP_007132765.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]