PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G125200.1
Common NamePHAVU_011G125200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 205aa    MW: 22862.7 Da    PI: 10.1207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G125200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-212271255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Phvul.011G125200.1 22 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAARNFRG 71
                        6********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-332279IPR001471AP2/ERF domain
PROSITE profilePS5103224.212279IPR001471AP2/ERF domain
PfamPF008479.7E-152271IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-232279IPR016177DNA-binding domain
SMARTSM003807.3E-392285IPR001471AP2/ERF domain
CDDcd000185.61E-192279No hitNo description
PRINTSPR003671.2E-112334IPR001471AP2/ERF domain
PRINTSPR003671.2E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVAKDKTVIK NKKPNNVADE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAR  60
AYDAAARNFR GPKAKTNFPP PPDTANNNKN DLDNNKNKTS SSSSPSQSST VESAAPERDV  120
TRRPVSALID RFPFLPIQQQ LLVTPVTAVR PVFLLDRAHY LTHQFPFRFE PAPVQSDSDS  180
SSVVDCLSKR ELNLDLNLAP PMDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2118871080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G125200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132794.11e-148hypothetical protein PHAVU_011G125200g
TrEMBLV7AIV61e-147V7AIV6_PHAVU; Uncharacterized protein
STRINGXP_007132794.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-32erf domain protein 9