PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G134300.1
Common NamePHAVU_011G134300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 259aa    MW: 28595.5 Da    PI: 5.9922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G134300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-1372118354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr+++P a      K++Ka+ L +++ ++k+L
  Phvul.011G134300.1  72 KNHSEAERRRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVITHLKEL 118
                         58*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.92369118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1372122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1072118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1472120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-582120No hitNo description
CDDcd048735.28E-7157228No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-5157199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEMEEFLWGV DIDGDVSKGN SDGFEGSNGV IGSGCGSSFS LVLDRERGEL VEAPVKLERK  60
GVSTERSTEA LKNHSEAERR RRARINAHLD TLRSVIPGAM KMDKASLLGE VITHLKELKR  120
NAAEACEGLM IPKDNDEISV EEQEGGLNGF PYSIRASLCC EYKPGLLSDI RQALDSLHLM  180
ITRADIATLE GRMKNVFVII SCKEHNFEDA SYRQFLAGSV HQALKSVLNR FSVSQDILGT  240
KKRRRISIFS SSSLEDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241245KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G134300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132898.10.0hypothetical protein PHAVU_011G134300g
TrEMBLV7AH010.0V7AH01_PHAVU; Uncharacterized protein
STRINGXP_007132898.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-29bHLH family protein