PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G142300.1
Common NamePHAVU_011G142300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 566aa    MW: 62885.8 Da    PI: 5.9087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G142300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.57.8e-1261955641373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+  A+a+s+++ +  ++l+++ +  +s +g+p+qRl ay++e+L a+   s++++y+al+++e +    ++ l++++l++e++P+l
  Phvul.011G142300.1 195 LKQLLIVSAKALSENNIKDFDQLIEKARSVVSITGEPIQRLGAYLVEGLVAKKEASGNNIYHALRCREPD---GKDLLSYMQLLYEICPYL 282
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea   e+++HiiDf+i+qG+QW +LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rLa++ +++++p+ef+ 
  Phvul.011G142300.1 283 KFGYMAANGAIAEACRDEDHIHIIDFQIGQGIQWWTLLQALAARPGGAPRVRITGIDDPLSKyvRGDGLEAVGKRLAEISQTFNIPVEFHS 373
                         **********************************************************999999*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v      ++ ++L+++pgEalaVn++lqlh++ desv+++++rd +L+lvkslsPkv +++eqe+++n+++F++rf+e+l+yy a+f+s+
  Phvul.011G142300.1 374 -VPVLAPYVTEDMLDIRPGEALAVNFSLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYLAIFESI 463
                         .5777889999******************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++l+r+s++ri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgW
  Phvul.011G142300.1 464 DVSLARKSKDRINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFSQYPLSSYVNSVIRSLLRCYS-EHYNLVEKDGAMLLGW 553
                         **********************************************************************9999.66************** PP

                GRAS 363 kdrpLvsvSaW 373
                         kdr+L+s+SaW
  Phvul.011G142300.1 554 KDRNLISASAW 564
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.999169546IPR005202Transcription factor GRAS
PfamPF035142.7E-123195564IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDLNEFLSVG VTSSTGIPCT SSYTPISSIP NRLLGSLKHD IEYSPNSALS THFDSDALSS  60
ALSDGQEQHT GGEIHSGVNP LQESNHYLYR PVSSVDHLQD GMQLSTRCFF PQDISYDHET  120
RFALQELETT LMAPDGDDQV TTSSTSLGVS RRPTTSGQRN RSWSHEGQPS DVARVGKRHK  180
STEEVSLQGS PSTNLKQLLI VSAKALSENN IKDFDQLIEK ARSVVSITGE PIQRLGAYLV  240
EGLVAKKEAS GNNIYHALRC REPDGKDLLS YMQLLYEICP YLKFGYMAAN GAIAEACRDE  300
DHIHIIDFQI GQGIQWWTLL QALAARPGGA PRVRITGIDD PLSKYVRGDG LEAVGKRLAE  360
ISQTFNIPVE FHSVPVLAPY VTEDMLDIRP GEALAVNFSL QLHHTADESV DMSNPRDGLL  420
RLVKSLSPKV TTLIEQESNT NTTPFFNRFI ETLDYYLAIF ESIDVSLARK SKDRINVEQH  480
CLARDIVNII ACEGKERVER HELLGKWKSR LTMAGFSQYP LSSYVNSVIR SLLRCYSEHY  540
NLVEKDGAML LGWKDRNLIS ASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-621955655375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G142300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132993.10.0hypothetical protein PHAVU_011G142300g
RefseqXP_007132994.10.0hypothetical protein PHAVU_011G142300g
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLV7AJD70.0V7AJD7_PHAVU; Uncharacterized protein
STRINGXP_007132993.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]