PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G147800.1
Common NamePHAVU_011G147800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 336aa    MW: 38004.8 Da    PI: 7.452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G147800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.7e-52141391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk 
  Phvul.011G147800.1  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKI 103
                         79**************************99.88***************8777899***********************************9 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyr+
  Phvul.011G147800.1 104 ITT-QGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRV 139
                         999.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-649165IPR003441NAC domain
PROSITE profilePS5100559.85514164IPR003441NAC domain
PfamPF023653.6E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGVAVRDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP  60
AKAVFGEKEW YFFSPRDRKY PNGTRPNRVA GSGYWKATGT DKIITTQGRK VGIKKALVFY  120
VGKAPKGSKT NWIMHEYRVL DSSRKKNLGT TKLDDWVLCR IYKKNSSSQK VEANFWAKEC  180
SNGSSPSSSS HVEDRLESFP EIDDQCFTFP SANPIKTMQQ QDEKYGFQNM GSEFFSDWVT  240
APDLDSISEF GSGCQTQGMV NYEYNDLFVP SVPPFHMEFM AGAPTEEEVQ SSVRTQRADG  300
EGYFQQNPNA RNLSGSNESL GFGFMDQQIR FGLRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10311704171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10311704171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10311704171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10311704171NO APICAL MERISTEM PROTEIN
3swm_A1e-10311707174NAC domain-containing protein 19
3swm_B1e-10311707174NAC domain-containing protein 19
3swm_C1e-10311707174NAC domain-containing protein 19
3swm_D1e-10311707174NAC domain-containing protein 19
3swp_A1e-10311707174NAC domain-containing protein 19
3swp_B1e-10311707174NAC domain-containing protein 19
3swp_C1e-10311707174NAC domain-containing protein 19
3swp_D1e-10311707174NAC domain-containing protein 19
4dul_A1e-10311704171NAC domain-containing protein 19
4dul_B1e-10311704171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G147800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133057.10.0hypothetical protein PHAVU_011G147800g
SwissprotA0A3Q7HH641e-122JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLV7ALM40.0V7ALM4_PHAVU; Uncharacterized protein
STRINGXP_007133057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-112NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]