PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G156800.1

Common Name

PHAVU_011G156800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23274.9 Da PI: 6.7959

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G156800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	21	74	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+ +Le++F +n+++ e++ +LA++lg++ rqV +W+qN+Ra++k Phvul.011G156800.1 21 NKKRLTEEQVSILEKCFGSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 67789************************************************9 PP
2	HD-ZIP_I/II	112.8	2.2e-36	21	112	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl++eqv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++elk Phvul.011G156800.1 21 NKKRLTEEQVSILEKCFGSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELK 111 79***************************************************************************************99 PP HD-ZIP_I/II 93 e 93 + Phvul.011G156800.1 112 K 112 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-18	13	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.115	16	76	IPR001356	Homeobox domain
SMART	SM00389	7.4E-17	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.34E-15	19	77	No hit	No description
Pfam	PF00046	5.9E-17	20	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-18	22	80	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGDLIFSFKN QEHGHHRARH NKKRLTEEQV SILEKCFGSN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE KDVERLKAEL KKAQEMMLVG 120 DVGKGGEHSN TSNNNSNNYN NNNNNGSCGE FSTSFEEGGS SGMVLDDETR HHECWQSGEV 180 MQVEELYAYF MGANYGSSLN EKRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G156800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007133162.1	1e-151	hypothetical protein PHAVU_011G156800g
TrEMBL	V7AM01	1e-150	V7AM01_PHAVU; Uncharacterized protein
STRING	XP_007133162.1	1e-151	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	9e-35	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Phvul.011G156800.1
Entrez Gene	18616316