PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G164800.1

Common Name

PHAVU_011G164800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SBP

Protein Properties

Length: 187aa MW: 20791.9 Da PI: 8.7796

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G164800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.1	1e-42	66	142	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskap+v+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Phvul.011G164800.1 66 CQAERCGADLTDAKRYHRRHKVCEFHSKAPAVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNP 142 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-36	58	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.718	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.37E-39	64	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.2E-32	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEARTVERKR SLVERVEEEV ENEVEEEDES GASLTEDDKK RGLSSNSGGG RRGSSGGGGG 60 VSPPSCQAER CGADLTDAKR YHRRHKVCEF HSKAPAVVVA GLRQRFCQQC SRFHDLAEFD 120 ESKRSCRRRL AGHNERRRKS NPEACSDGSK GHHHPKETTH CRLADERGRI QMNLPGSSGY 180 KSFNIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-37	53	139	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G164800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235817	2e-89	AC235817.2 Glycine max clone GM_WBa0006O01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007133260.1	1e-133	hypothetical protein PHAVU_011G164800g
Swissprot	Q38740	4e-41	SBP2_ANTMA; Squamosa promoter-binding protein 2
Swissprot	Q38741	2e-41	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	V7AI89	1e-131	V7AI89_PHAVU; Uncharacterized protein
STRING	XP_007133260.1	1e-132	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-41	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Phvul.011G164800.1
Entrez Gene	18616399

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]