PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G172800.1
Common NamePHAVU_011G172800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19304.1 Da    PI: 9.7774
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G172800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.3e-211058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        r+++   rq+tfskRr+g++KKA+ELS++C+a++a+++fs+ +k y +s
  Phvul.011G172800.1 10 RVKDPNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFS 58
                        6778889*************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-25172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.436161IPR002100Transcription factor, MADS-box
CDDcd001203.49E-30260No hitNo description
PRINTSPR004045.8E-20323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGRRKIQIAR VKDPNTRQIT FSKRRTGLFK KANELSIMCG AKIAIVVFSP GNKPYSFSHP  60
GVHLVAAEFL QQDLRPNQLQ RGPSFDVYKN HYFNLQNLDL MRQLAEEESK SAMLDEAIGH  120
GKGTRLSELQ KLHTSLADIN SKVKSEIEAA ETMILFSQEG VEFPSATREE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-17171171MEF2C
5f28_B7e-17171171MEF2C
5f28_C7e-17171171MEF2C
5f28_D7e-17171171MEF2C
6byy_A6e-17171171MEF2 CHIMERA
6byy_B6e-17171171MEF2 CHIMERA
6byy_C6e-17171171MEF2 CHIMERA
6byy_D6e-17171171MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G172800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133362.11e-125hypothetical protein PHAVU_011G172800g
TrEMBLV7AMK21e-124V7AMK2_PHAVU; Uncharacterized protein
STRINGXP_007133362.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.16e-29AGAMOUS-like 91