PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G178700.1
Common NamePHAVU_011G178700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 177aa    MW: 19622.5 Da    PI: 9.6902
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G178700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.91.7e-2419117199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +C  C+++ ++   +C + +yfp ++ ++ + + k+FG++n+l+l++ +++++r+ +++s++ eA+++a+dP++Ga+g+il+l+++++++ 
  Phvul.011G178700.1  19 PCGLCRYQHKRHDLSCEFGQYFPINRLREIESASKFFGMANLLRLMRGAEPSQRQVMANSILREAQMWANDPIHGALGHILTLSSHIKSVG 109
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                          el+l+++
  Phvul.011G178700.1 110 RELKLVNA 117
                         **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.95718119IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-2419116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
ISICICLQKK TMSEQRNVPC GLCRYQHKRH DLSCEFGQYF PINRLREIES ASKFFGMANL  60
LRLMRGAEPS QRQVMANSIL REAQMWANDP IHGALGHILT LSSHIKSVGR ELKLVNAMLA  120
HCSHQATPQI ATTVQDNLVA SSSNPAQSST VASQEKEGAA EEKDAEVKRK NGKRKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G178700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133438.11e-130hypothetical protein PHAVU_011G178700g, partial
TrEMBLV7AIJ91e-129V7AIJ9_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007133438.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.11e-20LOB domain-containing protein 9