PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G203400.1
Common NamePHAVU_011G203400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 468aa    MW: 51713.7 Da    PI: 6.5293
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G203400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09180222345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Phvul.011G203400.1 180 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 222
                         568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.8E-8172225No hitNo description
SMARTSM003388.7E-8178241IPR004827Basic-leucine zipper domain
PfamPF077166.7E-7178224IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415180224IPR004827Basic-leucine zipper domain
CDDcd147082.66E-22182234No hitNo description
SuperFamilySSF579597.5E-7182225No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
PfamPF141442.6E-33264339IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGSRTTRGFG VEDDKGAERG MPSFNSELPI SNSSYAEGST IDSFRVSDFG AFDQPYRVED  60
AVCLSGNPIY NSLKVSSQTI SPGSVHISSL GQLPTSLDKS PLTNQTELHR LRLQKVQSSN  120
PDTILVGNTD NQEESAMADA SPRTDISTDV DTDDKNQPFD RNQSLAAVSD SSDRSKDKSD  180
QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ ELQRARQQGI FISSSGDQAH  240
TLSGNGAMQF DAEYARWLEE QNRQINELRA AVNSHASDTE LRMIVDGILA HYDEIFRMKG  300
VAAKADVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLAN QLEPLTEQQL MGITNLQQSS  360
QQAEDALSQG MEALQQSLAE TLSTGAPASS GSSGNVANYM GQMAMAMGKL GTLEGFIRQA  420
DNLRQQTLQQ MHRILTTRQS ARALLAIHDY FSRLRALSSL WLARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G203400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026080.0AF402608.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133721.10.0hypothetical protein PHAVU_011G203400g
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLQ93XA10.0Q93XA1_PHAVU; TGA-type basic leucine zipper protein TGA2.1
STRINGXP_007133721.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-156TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Tucker ML,Whitelaw CA,Lyssenko NN,Nath P
    Functional analysis of regulatory elements in the gene promoter for an abscission-specific cellulase from bean and isolation, expression, and binding affinity of three TGA-type basic leucine zipper transcription factors.
    Plant Physiol., 2002. 130(3): p. 1487-96
    [PMID:12428013]