PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G205900.1
Common NamePHAVU_011G205900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 339aa    MW: 38051.8 Da    PI: 9.7556
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G205900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.7e-1569153186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v +L+ea++ ++   +r+klk+++We+v++++     +++  ++++qCk+k e+++kry+ + ++++       s++p++++l+
  Phvul.011G205900.1  69 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARRVssraTSTKSPKTSTQCKNKVESMKKRYRSESATAEH-----PSSWPLYSRLD 153
                         5*************************************87666777788999***************9999986.....567****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-2067153No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGVKDQEMEK EKEETTNHNN NLDQTKNQNQ NLNLDQNNHP SNSLLLPIKE ESGVRSKGFG  60
GGDRVKRDEW SEGAVSTLLE AYEAKWVLRN RAKLKGHDWE DVARRVSSRA TSTKSPKTST  120
QCKNKVESMK KRYRSESATA EHPSSWPLYS RLDLLLRGTG PLLSSPPPLL TVAPSSAEPP  180
QPSPPSEPLA IAQNSHGSNG VDDKLVKEDV LAAKSFEHVS SKNPLDTDSS TPALYSKKEE  240
MRCNKRKKKG IENTGRRRKE YMEIAESLRW LAEAMIRSEE ARMETMKEIE RMRVEAEAKR  300
GEMDLKRTEI IANTQLEIAR IFANVNKGVD SSLRIGRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244258KRKKKGIENTGRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G205900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133747.10.0hypothetical protein PHAVU_011G205900g
TrEMBLV7ANF90.0V7ANF9_PHAVU; Uncharacterized protein
STRINGXP_007133747.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-93sequence-specific DNA binding transcription factors