PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G212900.1
Common NamePHAVU_011G212900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 344aa    MW: 38724.4 Da    PI: 7.3673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G212900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18e-07182201120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C+k+F+r  nL+ H+
  Phvul.011G212900.1 182 FPCPVCSKTFNRYNNLQMHM 201
                         89*****************9 PP
2zf-C2H215.45.2e-05266288123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C +Cgk F  k + ++H +++
  Phvul.011G212900.1 266 YMCRKCGKAFAVKGDWRTHEKNC 288
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.15E-6178204No hitNo description
PfamPF139122.8E-5182201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-6182201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.034182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SuperFamilySSF576679.79E-7250286No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540266286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MTDPKSNLFH EWFNFMLLHP HYPSSSSSSQ SYPLPNYSNN RFGIQLQGES SSSSSSYSYS  60
YSYPPPPSSP PLREALPLIN KISLTGENDE ASPCVVEEKE EEKKHESGED GDQETVTVAL  120
HIGLPRMDTS SDLGSSRVSS TCREMGEKEE VNIVSEHPLE RLNKGQYWIP TPSQILIGPT  180
QFPCPVCSKT FNRYNNLQMH MWGHGSQYRK GPDSLKGTQP TAMLRLPCFC CAPGCKHNID  240
HPRARPLKDF RTLQTHYKRK HGIKPYMCRK CGKAFAVKGD WRTHEKNCGK IWYCLCGSDF  300
KHKRSLKDHV KAFGYGHGAF GIDCLQEEDE AASEIEHDGE NST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G212900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133835.10.0hypothetical protein PHAVU_011G212900g
SwissprotQ9SVY11e-122ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV7AJX00.0V7AJX0_PHAVU; Uncharacterized protein
STRINGXP_007133835.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]