PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.L006500.1
Common NamePHAVU_L006500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 192aa    MW: 21264.9 Da    PI: 7.4622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.L006500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-18555155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Phvul.L006500.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFKTAEAAARAYDKAAILMNG 55
                     59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.20E-22564No hitNo description
PfamPF008471.6E-10655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32663IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-19664IPR016177DNA-binding domain
PROSITE profilePS5103221.838663IPR001471AP2/ERF domain
SMARTSM003801.9E-38669IPR001471AP2/ERF domain
PRINTSPR003675.8E-10718IPR001471AP2/ERF domain
PRINTSPR003675.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVQAKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFKTAE AAARAYDKAA ILMNGQNAKT  60
NFPAPPLNQP EGATTTATVC EDPFSSPNVL AEHLSRKLKK CCKDPSPSLT CLRLDADNSH  120
IGVWQKGAGP HSDSNWIVRV ELGKKHAESE SSVSEGSPQK SASDGEEEDE EDRIAMQMID  180
ELLNWNYYPC G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-15563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-15263163ATERF1
3gcc_A2e-15263163ATERF1
5wx9_A5e-156631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.L006500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163907.11e-143hypothetical protein PHAVU_L006500g
SwissprotQ3E9587e-69SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLV7D3Q51e-141V7D3Q5_PHAVU; Uncharacterized protein
STRINGXP_007163907.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.14e-61ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]