PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.L010000.1
Common NamePHAVU_L010000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 408aa    MW: 46244.8 Da    PI: 7.2418
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.L010000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.8e-50511762128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++
  Phvul.L010000.1  51 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTE 143
                      79***************************.89***************8778899**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + + +glkktLvfy+g+apkg +t+W+m+eyrl
  Phvul.L010000.1 144 NFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 176
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.80450197IPR003441NAC domain
SuperFamilySSF1019413.53E-5550196IPR003441NAC domain
PfamPF023654.1E-2552176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAIAAANSSP TMSLTHSQSQ EDVTTASTTN DNNNNNNNDN KPDDHEHDMV MPGFRFHPTE  60
EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD  120
RPNRVTTSGY WKATGADRMI RTENFRSIGL KKTLVFYSGK APKGIRTSWI MNEYRLPQHE  180
TERYQKAEIS LCRVYKRAGV EDHPSLPRCL PTRPSSSRAS SHSETKKHNE MVHHNMGFVG  240
QSKPTEHIVD KMNETEASSD VNTALGLSKY NAYRAAMGAL STTMALPVVQ MDEEALLMMQ  300
HQQQSKQAAA HAGAPGIGTI FPAGPSSSNN NGVVNMDDLN RLMSYQQQYY NVQSHPNQFS  360
TLLMQPSPVV SLSSLPNPLP TTFSDRLWEW NPIPEPPNQE YSNMSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-555219719165NO APICAL MERISTEM PROTEIN
1ut4_B1e-555219719165NO APICAL MERISTEM PROTEIN
1ut7_A1e-555219719165NO APICAL MERISTEM PROTEIN
1ut7_B1e-555219719165NO APICAL MERISTEM PROTEIN
4dul_A1e-555219719165NAC domain-containing protein 19
4dul_B1e-555219719165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.L010000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163863.10.0hypothetical protein PHAVU_L010000g
TrEMBLV7D0B90.0V7D0B9_PHAVU; Uncharacterized protein
STRINGXP_007163863.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-113NAC domain containing protein 35